The human skin harbors a complex ecosystem of bacteria, fungi, and viruses, collectively known as the skin microbiome, which is crucial for maintaining skin health, immunity, and overall appearance. This intricate balance protects the skin barrier from infections and pathogenic invaders, while also regulating the immune system to prevent inflammation and various skin disorders. However, conventional dermatological treatments often fall short in addressing the inherent variability among individuals and the complex interplay of factors influencing skin health. Challenges such as severe skin scarring from traditional wound healing methods, and functional and aesthetic issues arising from burns or chronic ulcers, highlight the limitations of existing solutions. Moreover, imbalances in the skin microbiome can lead to common conditions like acne and eczema, and even accelerate the aging process. Environmental stressors like toxic pollutants and UV radiation further compromise the skin’s defense mechanisms, while many chemical-based cosmetic products can cause harm to the skin barrier, leading to irritations and allergic reactions.
In response to these multifaceted challenges, bioengineering and synthetic biology have emerged as a promising frontier for developing a new generation of personalized and sustainable skincare solutions. These fields offer innovative systems and devices that not only enhance the understanding of disease mechanisms but also provide advanced diagnostic tools and improved therapeutic strategies for various skin conditions. The ability to precisely analyze individual skin profiles through emerging technologies like artificial intelligence (AI) and high-throughput microbiome sequencing, combined with the power to genetically modify microbial strains and engineer delivery systems, presents an unprecedented opportunity to create tailored and more effective cosmetic formulations. This shift aims to move beyond generic treatments, offering personalized care that supports and sustains the natural balance of each individual’s skin microbiome.
Key Findings
• Crucial Role of Skin Microbiome: The human skin microbiome, an ecosystem of bacteria, fungi, and viruses, is vital for maintaining skin health, immunity, and appearance, protecting against infections and regulating the immune system. Imbalances can lead to acne, eczema, and accelerated aging.
• Current Microbiome-Friendly Cosmetics: Existing products leverage prebiotics, probiotics (e.g., Lactobacillus rhamnosus, Lactobacillus reuteri DSM 17938, Micrococcus luteus Q24, Bifidobacterium lactis, Bacillus coagulans), and natural antimicrobial agents to promote beneficial bacteria and inhibit harmful ones, offering anti-aging, moisturizing, and skin disorder prevention benefits.
• Advances in Genetically Modified Bacteria: Bioengineered microbial strains can produce antimicrobial peptides (AMPs) for acne treatment, achieving 68–83% reduction in bacterial activity. Staphylococcus epidermidis has been engineered to reduce inflammation, promote collagen synthesis, and even elicit anti-inflammatory responses by expressing tumor antigens.
• Engineering Skin-Friendly Microbes: Synthetic biology enables the production of anti-aging peptides (bacteriocins) via quorum sensing and procollagen from bacteriochlorophyll α. Genetic modifications can enhance melanin production by increasing tyrosinase activity and regulating its expression. Additionally, microorganisms like cyanobacteria and microalgae can produce UV protectants (mycosporine-like amino acids) and antioxidants (carotenoids).
• CRISPR and Synthetic Biology Potential: CRISPR technology facilitates precise gene editing for optimizing metabolic pathways, leading to increased production of cosmetic ingredients like hyaluronic acid (HA) (e.g., 86% gene repression resulting in higher yields) and terpenoids. This technology offers high precision, efficiency, and cost-effectiveness for industrial applications.
• Personalized Skincare through Microbiome Sequencing: Next-generation sequencing (NGS) allows rapid and comprehensive analysis of individual skin microbiomes, enabling the customization of skincare products. This includes techniques like 16S rRNA gene sequencing, metagenomics, and meta-transcriptomics to understand microbial activities and interactions.
• AI-Driven Microbiome Analysis: Artificial intelligence (AI) models, utilizing techniques like K-Nearest Neighbors (KNN) and Natural Language Processing (NLP), analyze diverse skin data (e.g., skin type, acne count, UV exposure) to provide tailored skincare recommendations and predict effective products. Machine learning algorithms map complex skin-microbiome interactions and can differentiate between healthy and diseased skin states.
• Sustainability of Bioengineered Cosmetics: Bioengineered alternatives significantly reduce environmental impact by replacing harmful synthetic chemicals with organic, biodegradable materials. They promote recyclable and refillable packaging, utilize bio-based ingredients, and have a substantially lower carbon footprint compared to traditional cosmetics (e.g., up to 82% reduction for shea butter production).
• Regulatory and Ethical Considerations: The development of bioengineered cosmetics necessitates rigorous risk assessments and clinical evaluations due to potential risks from genetically modified organisms (GMOs), such as allergenicity, toxicity, and ecological impact. Ethical concerns surrounding patient privacy, data protection in microbiome analysis, and the need for informed consent are paramount. Regulatory frameworks vary globally, with the EU generally imposing stricter regulations on live microorganisms and animal testing than the US FDA.
Looking ahead, the future implications of this study are profound and transformative. Deeper integration of AI with microbiome engineering will be crucial in accelerating the design of highly tailored formulations and predictive models for personalized skin health. The establishment of rigorous, region-specific regulatory pathways and standardized safety protocols will be critical for translating these laboratory advances into globally accepted consumer products, ensuring both efficacy and public trust. Furthermore, the concept of sustainability must evolve beyond mere ingredient substitution, moving towards comprehensive life-cycle assessments, circular packaging solutions, and the widespread adoption of renewable microbial platforms that minimize environmental impact across the entire product lifecycle. To validate these innovations, longitudinal clinical studies are urgently required to establish efficacy and safety across diverse populations, paving the way for widespread adoption. Ultimately, the trajectory of the next generation of personalized and eco-conscious cosmetics will be defined by interdisciplinary collaborations among engineers, dermatologists, regulators, and industry stakeholders, ensuring that bioengineered cosmetics transition from promising prototypes to impactful solutions that genuinely shape the future of skincare.

In this figure : Key interactions between bioengineered bacteria and skin cells.
Link to the study: https://www.mdpi.com/2079-9284/12/5/205